STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH02126.1Ig-like domain (group 2). (681 aa)    
Predicted Functional Partners:
SFH23107.1
Hypothetical protein.
   
   0.764
SFH02092.1
Hypothetical protein.
       0.671
SFH02107.1
Biotin-lipoyl like.
       0.671
SFF97039.1
Nucleotidyltransferase.
     
 0.608
SFG35093.1
Nucleotidyl transferase.
     
 0.608
SFH02146.1
Hypothetical protein.
       0.520
SFH02166.1
Hypothetical protein.
       0.507
SFG76661.1
Stage IV sporulation protein FB.
   
    0.504
SFF99373.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.470
SFG61779.1
Hypothetical protein.
    
 0.413
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.