STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH05948.1Gamma-glutamyl-gamma-aminobutyrate hydrolase. (233 aa)    
Predicted Functional Partners:
SFG48399.1
Membrane dipeptidase.
     0.921
SFG40854.1
GXGXG motif-containing protein.
    
  0.704
SFH05961.1
TRAP-type C4-dicarboxylate transport system, large permease component.
       0.701
SFH05974.1
Hypothetical protein.
       0.652
SFG72020.1
DNA-binding transcriptional regulator, FrmR family.
   
    0.627
SFF98539.1
L-glutamine synthetase.
  
 
 0.604
SFF98596.1
Glutamine synthetase.
  
 
 0.604
SFF98616.1
Glutamine synthetase.
  
 
 0.604
SFG40808.1
Glutamine synthetase.
  
 
 0.604
SFG70512.1
Glutamine synthetase.
  
 
 0.604
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.