STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH12716.1NfeD-like C-terminal, partner-binding. (165 aa)    
Predicted Functional Partners:
SFH12699.1
Uncharacterized protein YqfA, UPF0365 family.
 
  
 0.993
SFH29791.1
Membrane protein implicated in regulation of membrane protease activity.
  
  
 0.687
rpsU
Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.674
SFH29779.1
Flotillin.
   
    0.586
SFH03718.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
  
  
 0.567
SFH12640.1
Hypothetical protein.
       0.495
SFH12657.1
TIGR00299 family protein.
       0.495
SFH12677.1
Hypothetical protein.
       0.495
SFG72773.1
Yip1 domain-containing protein.
   
    0.476
SFH12749.1
Histidine triad (HIT) family protein.
       0.476
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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