STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH15786.1TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (169 aa)    
Predicted Functional Partners:
SFH15805.1
TRAP transporter, DctM subunit.
 
  
 0.905
SFH15827.1
Glutaconate CoA-transferase subunit A.
       0.709
SFH15739.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.685
SFG11842.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.670
SFH15851.1
Glutaconate CoA-transferase subunit B.
       0.668
SFG11817.1
TRAP transporter, DctM subunit.
 
     0.601
SFG23336.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.538
SFG11866.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.531
SFG23375.1
TRAP transporter, DctM subunit.
 
     0.448
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.