STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH18162.1Hypothetical protein. (114 aa)    
Predicted Functional Partners:
SFG76235.1
Putative adhesin.
 
  
 0.664
SFH29791.1
Membrane protein implicated in regulation of membrane protease activity.
   
  
 0.626
SFG77832.1
Phage shock protein C (PspC) family protein.
  
    0.625
SFH18142.1
Hypothetical protein.
       0.592
SFH12699.1
Uncharacterized protein YqfA, UPF0365 family.
   
    0.461
SFH12716.1
NfeD-like C-terminal, partner-binding.
   
  
 0.432
SFH18121.1
D-alanine transaminase; Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha-keto acid in the first half-reaction.
       0.418
SFG25619.1
Putative membrane protein.
  
    0.407
SFG57514.1
Putative membrane protein.
  
    0.407
SFH13037.1
4 TMS phage holin, superfamily IV.
  
    0.407
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.