STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH26060.1Zinc carboxypeptidase. (255 aa)    
Predicted Functional Partners:
SFG07473.1
Putative small multi-drug export protein.
  
     0.581
SFG95769.1
L-amino acid N-acyltransferase YncA.
  
  
  0.517
SFF93175.1
Xaa-Pro dipeptidase.
    
 0.506
SFG38161.1
Xaa-Pro dipeptidase.
    
 0.506
SFG77364.1
Xaa-Pro aminopeptidase.
    
 0.506
SFG78757.1
Xaa-Pro dipeptidase.
    
 0.506
SFH14537.1
Xaa-Pro aminopeptidase.
    
 0.506
SFG64525.1
N(6)-acetyl-beta-lysine transaminase precursor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.490
SFG66013.1
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.490
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.
    
 0.490
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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