STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH27714.1ABC transporter. (118 aa)    
Predicted Functional Partners:
SFH27727.1
Energy-coupling factor transport system permease protein.
 
 0.908
SFH27700.1
Energy-coupling factor transport system ATP-binding protein.
 
     0.836
SFH27737.1
Energy-coupling factor transport system substrate-specific component.
 
     0.780
SFH27751.1
Hypothetical protein.
       0.746
SFG56766.1
Energy-coupling factor transport system permease protein.
 
 0.743
SFG24437.1
Energy-coupling factor transport system permease protein.
 
 0.698
SFH32399.1
Energy-coupling factor transport system permease protein.
 
 0.650
SFG75506.1
Cobalt/nickel transport system permease protein.
 
 0.649
SFG34807.1
Energy-coupling factor transport system permease protein.
 
 0.639
SFF98121.1
Cobalt/nickel transport system permease protein.
  
 0.586
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.