STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH27998.1Ech hydrogenase subunit E. (358 aa)    
Predicted Functional Partners:
SFH27960.1
Ech hydrogenase subunit C.
 0.999
SFH27947.1
Formate hydrogenlyase subunit 4.
 
 0.998
SFH28019.1
4Fe-4S dicluster domain-containing protein.
 
 0.994
SFH27977.1
Respiratory-chain NADH dehydrogenase, subunit.
 
 
 0.978
SFG40408.1
NADH-quinone oxidoreductase subunit I.
 
 0.953
SFH27933.1
Ech hydrogenase subunit A.
 
   
 0.913
SFH28051.1
Hydrogenase nickel incorporation protein HypB.
   
 
 0.899
SFG00054.1
NADH-quinone oxidoreductase subunit F.
 
 0.873
SFG01156.1
NADH-quinone oxidoreductase subunit F.
 
 0.873
nuoB
NADH-quinone oxidoreductase subunit B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
 0.873
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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