STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH34255.1Pilus assembly protein CpaF. (447 aa)    
Predicted Functional Partners:
SFH34226.1
Type II secretion system (T2SS), protein F.
 
  
 0.984
SFH34241.1
Flp pilus assembly protein TadB.
 
  
 0.981
SFH34273.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
  
 0.974
SFH33936.1
Flp pilus assembly protein TadB.
 
  
 0.913
SFH34203.1
Pilus assembly protein Flp/PilA.
 
  
 0.908
SFH34293.1
Flp pilus assembly protein CpaB.
  
  
 0.898
SFH34187.1
Hypothetical protein.
 
     0.870
SFH34310.1
Hypothetical protein.
  
  
 0.773
SFH34378.1
AAA-like domain-containing protein.
    
 0.757
SFH34326.1
Transglycosylase SLT domain-containing protein.
       0.712
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.