STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH36073.1Putative regulatory protein, FmdB family. (76 aa)    
Predicted Functional Partners:
SFH36056.1
4Fe-4S dicluster domain-containing protein.
       0.773
SFH36039.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
 
     0.657
SFG02138.1
Ni-dependent carbon monoxide dehydrogenase precursor.
  
     0.531
SFH30337.1
Ni-dependent carbon monoxide dehydrogenase precursor.
  
     0.528
SFG54298.1
Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
  
     0.515
SFH26935.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
     0.507
SFG12823.1
Protein of unknown function.
  
     0.478
SFH06731.1
Hypothetical protein.
  
     0.464
SFH09592.1
Hypothetical protein.
  
     0.445
SFH06745.1
TPR repeat-containing protein.
  
     0.440
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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