STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH36192.1Type II secretion system (T2SS), protein E, N-terminal domain. (332 aa)    
Predicted Functional Partners:
SFF92559.1
Type IV pilus assembly protein PilC.
 
 0.984
SFF92735.1
Type IV pilus assembly protein PilC.
 
 0.984
SFF92722.1
Pilus retraction ATPase PilT.
  
 0.981
SFF92544.1
Type II/IV secretion system protein.
 
     0.976
SFF92946.1
Twitching motility protein PilT.
  
 0.971
SFF92759.1
Type IV pilus assembly protein PilM.
 
 
 
 0.923
SFF92828.1
N-terminal methylation site-containing protein.
 
  
 0.918
SFF92639.1
Type IV pilus assembly protein PilM.
 
 
 
 0.917
SFF92980.1
Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.890
SFF92576.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
 0.874
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.