STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH40057.1Predicted aconitase subunit 1. (401 aa)    
Predicted Functional Partners:
SFH40043.1
Predicted aconitase subunit 2.
 
 
 
 0.995
SFG44882.1
Proline racemase; Belongs to the proline racemase family.
  
 
 0.608
SFH02304.1
Proline racemase; Belongs to the proline racemase family.
  
 
 0.608
SFG14610.1
L-alanine-DL-glutamate epimerase.
    
  0.589
hisD-2
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
       0.570
SFH40012.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
       0.552
SFH40073.1
DNA-binding transcriptional regulator, GntR family.
       0.532
SFG58867.1
Urocanate hydratase.
 
     0.470
SFH39996.1
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-); Belongs to the binding-protein-dependent transport system permease family.
       0.433
SFH40091.1
(R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase.
       0.425
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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