STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH40609.1DNA-binding transcriptional regulator GbsR, MarR family; Belongs to the GbsR family. (192 aa)    
Predicted Functional Partners:
SFG38442.1
Cell wall-active antibiotics response 4TMS YvqF.
  
     0.581
SFH40626.1
Glycine betaine/proline transport system substrate-binding protein.
 
   
 0.548
SFH40593.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.545
SFG48047.1
Sporulation protein YtrH.
  
     0.464
SFF93725.1
Hypothetical protein.
  
     0.458
SFG10021.1
Hypothetical protein.
  
     0.418
SFG09407.1
Uncharacterized conserved protein, DUF2164 family.
  
     0.408
SFH40659.1
Glycine betaine/proline transport system ATP-binding protein.
 
     0.404
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.