STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH40881.1Transcriptional regulator, AlpA family. (150 aa)    
Predicted Functional Partners:
SFH40902.1
Hypothetical protein.
       0.744
SFG40854.1
GXGXG motif-containing protein.
    
  0.704
SFH09391.1
Phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
     
 0.620
mdh
Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
     
 0.580
SFH18669.1
Protein of unknown function.
  
     0.537
SFG68963.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
     
 0.513
SFH29234.1
Copper amine oxidase N-terminal domain-containing protein.
  
     0.507
SFH02489.1
Aconitase.
     
 0.475
SFH02599.1
Aconitase.
     
 0.475
SFH40925.1
AraC family transcriptional regulator.
     
 0.449
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.