A0A4S2MLN9 protein (Ascodesmis nigricans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4S2MLN9

Uncharacterized protein. (511 aa)

Predicted Functional Partners:

A0A4S2MSZ8

0.990

A0A4S2MY16

0.990

A0A4S2N1A2

0.948

A0A4S2MRA9

0.946

A0A4S2N462

0.942

A0A4S2N6J9

0.929

A0A4S2MQ68

0.905

A0A4S2MXK9

0.898

A0A4S2MSY7

0.896

A0A4S2N056

0.894

Your Current Organism:

Ascodesmis nigricans

NCBI taxonomy Id: 341454
Other names: A. nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S2MLN9	A0A4S2MQ68	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.905
A0A4S2MLN9	A0A4S2MRA9	Uncharacterized protein.	ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family.	0.946
A0A4S2MLN9	A0A4S2MSY7	Uncharacterized protein.	Nop domain-containing protein.	0.896
A0A4S2MLN9	A0A4S2MSZ8	Uncharacterized protein.	Fibrillarin.	0.990
A0A4S2MLN9	A0A4S2MXK9	Uncharacterized protein.	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.898
A0A4S2MLN9	A0A4S2MY16	Uncharacterized protein.	Pre-rRNA processing nucleolar protein-like protein Sik1.	0.990
A0A4S2MLN9	A0A4S2N056	Uncharacterized protein.	Putative rRNA pseudouridine synthase.	0.894
A0A4S2MLN9	A0A4S2N1A2	Uncharacterized protein.	G-patch domain-containing protein.	0.948
A0A4S2MLN9	A0A4S2N462	Uncharacterized protein.	RRM domain-containing protein.	0.942
A0A4S2MLN9	A0A4S2N6J9	Uncharacterized protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.929
A0A4S2MQ68	A0A4S2MLN9	P-loop containing nucleoside triphosphate hydrolase protein.	Uncharacterized protein.	0.905
A0A4S2MQ68	A0A4S2MRA9	P-loop containing nucleoside triphosphate hydrolase protein.	ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family.	0.945
A0A4S2MQ68	A0A4S2MSY7	P-loop containing nucleoside triphosphate hydrolase protein.	Nop domain-containing protein.	0.813
A0A4S2MQ68	A0A4S2MSZ8	P-loop containing nucleoside triphosphate hydrolase protein.	Fibrillarin.	0.797
A0A4S2MQ68	A0A4S2MXK9	P-loop containing nucleoside triphosphate hydrolase protein.	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.760
A0A4S2MQ68	A0A4S2MY16	P-loop containing nucleoside triphosphate hydrolase protein.	Pre-rRNA processing nucleolar protein-like protein Sik1.	0.690
A0A4S2MQ68	A0A4S2N056	P-loop containing nucleoside triphosphate hydrolase protein.	Putative rRNA pseudouridine synthase.	0.785
A0A4S2MQ68	A0A4S2N1A2	P-loop containing nucleoside triphosphate hydrolase protein.	G-patch domain-containing protein.	0.506
A0A4S2MQ68	A0A4S2N462	P-loop containing nucleoside triphosphate hydrolase protein.	RRM domain-containing protein.	0.521
A0A4S2MQ68	A0A4S2N6J9	P-loop containing nucleoside triphosphate hydrolase protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.889