STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4S2MM15ATP-dependent RNA helicase DED1; Belongs to the DEAD box helicase family. (585 aa)    
Predicted Functional Partners:
A0A4S2N411
Pre-mRNA-splicing factor prp1, variant.
    
 0.950
A0A4S2MTE5
P-loop containing nucleoside triphosphate hydrolase protein.
   
 0.945
A0A4S2N706
Uncharacterized protein.
    
 0.907
A0A4S2N7Q6
Eukaryotic initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.
    
 0.894
A0A4S2MLD1
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 
 0.876
A0A4S2N8C5
ATP synthase subunit gamma.
   
 
 0.871
A0A4S2MSY4
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.812
A0A4S2N5H6
F1 complex, OSCP/delta subunit of ATPase.
   
 
 0.812
NOP7
Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.810
A0A4S2MWJ7
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 
 0.806
Your Current Organism:
Ascodesmis nigricans
NCBI taxonomy Id: 341454
Other names: A. nigricans
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