A0A4V3SJB5 protein (Ascodesmis nigricans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4V3SJB5

Mitochondrial ribosomal protein. (207 aa)

Predicted Functional Partners:

A0A4S2N4R2

0.968

A0A4S2N6S2

0.965

A0A4S2N1Q5

0.954

A0A4S2N1X8

0.953

A0A4S2N7R3

0.949

A0A4S2N3Y9

0.938

A0A4S2N770

0.938

A0A4S2N1J4

0.936

A0A4S2N6N2

0.935

A0A4V3SJR4

0.935

Your Current Organism:

Ascodesmis nigricans

NCBI taxonomy Id: 341454
Other names: A. nigricans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A4S2N1J4	A0A4S2N1Q5	MRP-S28 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A4S2N1J4	A0A4S2N1X8	MRP-S28 domain-containing protein.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.951
A0A4S2N1J4	A0A4S2N3Y9	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.955
A0A4S2N1J4	A0A4S2N4R2	MRP-S28 domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A4S2N1J4	A0A4S2N6N2	MRP-S28 domain-containing protein.	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.913
A0A4S2N1J4	A0A4S2N6S2	MRP-S28 domain-containing protein.	Ribosomal protein S2.	0.999
A0A4S2N1J4	A0A4S2N770	MRP-S28 domain-containing protein.	Manganese and iron superoxide dismutase.	0.938
A0A4S2N1J4	A0A4S2N7R3	MRP-S28 domain-containing protein.	Ribosomal_S10 domain-containing protein.	0.999
A0A4S2N1J4	A0A4V3SJB5	MRP-S28 domain-containing protein.	Mitochondrial ribosomal protein.	0.936
A0A4S2N1J4	A0A4V3SJR4	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.951
A0A4S2N1Q5	A0A4S2N1J4	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	MRP-S28 domain-containing protein.	0.999
A0A4S2N1Q5	A0A4S2N1X8	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.958
A0A4S2N1Q5	A0A4S2N3Y9	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.920
A0A4S2N1Q5	A0A4S2N4R2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
A0A4S2N1Q5	A0A4S2N6N2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.907
A0A4S2N1Q5	A0A4S2N6S2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal protein S2.	0.999
A0A4S2N1Q5	A0A4S2N770	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Manganese and iron superoxide dismutase.	0.928
A0A4S2N1Q5	A0A4S2N7R3	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal_S10 domain-containing protein.	0.999
A0A4S2N1Q5	A0A4V3SJB5	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Mitochondrial ribosomal protein.	0.954
A0A4S2N1Q5	A0A4V3SJR4	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.993