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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORA00909.1Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)    
Predicted Functional Partners:
OQZ94671.1
Maltokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.998
OQZ98639.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.954
OQZ97433.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.954
ORA00908.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.948
OQZ94670.1
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.936
ORA00448.1
Glycogen debranching enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.880
OQZ91842.1
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
 
 0.796
OQZ95429.1
Glycogen phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.758
OQZ97136.1
Trehalose-6-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.753
OQZ94602.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
 
 
 0.742
Your Current Organism:
Mycolicibacter arupensis
NCBI taxonomy Id: 342002
Other names: DSM 44942, M. arupensis, Mycobacterium arupense, Mycobacterium arupense Cloud et al. 2006, Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018, strain AR30097
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.