Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ORA00106.1C-5 sterol desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)    
Predicted Functional Partners:
OQZ97525.1
Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.869
OQZ92885.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.831
ORA00105.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.651
OQZ92855.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.613
OQZ92183.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.613
ORA00104.1
PPE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.587
OQZ92898.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.586
ORA00107.1
Lectin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.523
ORA00629.1
Lysoplasmalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.504
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
    
   0.503
Your Current Organism:
Mycolicibacter arupensis
NCBI taxonomy Id: 342002
Other names: DSM 44942, M. arupensis, Mycobacterium arupense, Mycobacterium arupense Cloud et al. 2006, Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018, strain AR30097
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