Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OQZ98669.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)    
Predicted Functional Partners:
OQZ95111.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.767
OQZ99297.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.712
OQZ97172.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
OQZ98670.1
YebC/PmpR family DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.603
pdxS
Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
       0.582
tesB
acyl-CoA thioesterase II; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.582
pdxT
Glutamine amidotransferase subunit PdxT; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
       0.582
OQZ91968.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.510
OQZ99298.1
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
OQZ92885.1
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.455
Your Current Organism:
Mycolicibacter arupensis
NCBI taxonomy Id: 342002
Other names: DSM 44942, M. arupensis, Mycobacterium arupense, Mycobacterium arupense Cloud et al. 2006, Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018, strain AR30097
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