Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
OQZ98173.1Thioredoxin domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (668 aa)    
Predicted Functional Partners:
ORA00780.1
Endoglycoceramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.788
OQZ96386.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.788
OQZ94843.1
Endoglycoceramidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.788
OQZ94826.1
Endoglycoceramidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
   
 0.788
OQZ93182.1
Endoglycoceramidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.788
OQZ98190.1
Steroid delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.771
OQZ98191.1
Phosphate ABC transporter substrate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
       0.506
ORA00410.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.502
ORA00334.1
Type VII secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.502
ORA00157.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.502
Your Current Organism:
Mycolicibacter arupensis
NCBI taxonomy Id: 342002
Other names: DSM 44942, M. arupensis, Mycobacterium arupense, Mycobacterium arupense Cloud et al. 2006, Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018, strain AR30097
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