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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQZ97774.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)    
Predicted Functional Partners:
OQZ97834.1
Phosphotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.781
OQZ96364.1
Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.693
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.593
OQZ97773.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.571
OQZ97775.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.553
OQZ97769.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
OQZ97770.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
OQZ97771.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
OQZ97772.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
  
  
 0.428
Your Current Organism:
Mycolicibacter arupensis
NCBI taxonomy Id: 342002
Other names: DSM 44942, M. arupensis, Mycobacterium arupense, Mycobacterium arupense Cloud et al. 2006, Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018, strain AR30097
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