Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OQZ97413.1Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)    
Predicted Functional Partners:
OQZ97459.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.994
OQZ97414.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.992
OQZ97412.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.972
OQZ97416.1
Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.836
OQZ97415.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.827
OQZ94377.1
Flagellar biosynthesis protein FlgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.750
OQZ97417.1
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
BST15_17890
Serine/threonine protein phosphatase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.450
ORA00117.1
Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.433
Your Current Organism:
Mycolicibacter arupensis
NCBI taxonomy Id: 342002
Other names: DSM 44942, M. arupensis, Mycobacterium arupense, Mycobacterium arupense Cloud et al. 2006, Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018, strain AR30097
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