Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OQZ96878.1PPE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)    
Predicted Functional Partners:
OQZ98535.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.837
OQZ91216.1
ESX secretion-associated protein EspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.822
OQZ96876.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.688
OQZ96877.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.688
OQZ96879.1
PE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.672
OQZ96875.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
Your Current Organism:
Mycolicibacter arupensis
NCBI taxonomy Id: 342002
Other names: DSM 44942, M. arupensis, Mycobacterium arupense, Mycobacterium arupense Cloud et al. 2006, Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018, strain AR30097
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