Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
OQZ93218.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)    
Predicted Functional Partners:
rmuC
Recombinase RmuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.766
OQZ93219.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.675
OQZ93238.1
Phosphotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.672
OQZ93237.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.642
OQZ93220.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.642
OQZ93216.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.629
OQZ93221.1
3-ketoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
OQZ93222.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
OQZ93215.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.510
OQZ96876.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.472
Your Current Organism:
Mycolicibacter arupensis
NCBI taxonomy Id: 342002
Other names: DSM 44942, M. arupensis, Mycobacterium arupense, Mycobacterium arupense Cloud et al. 2006, Mycolicibacter arupensis (Cloud et al. 2006) Gupta et al. 2018, strain AR30097
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