Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0009Uncharacterized conserved protein; Belongs to the UPF0434 family. (65 aa)    
Predicted Functional Partners:
amb0010
Uncharacterized protein conserved in bacteria.
 
     0.896
amb0008
Uncharacterized protein; Similar to the N-terminal domain of Lon protease.
 
     0.845
amb0007
Thioredoxin domain-containing protein.
 
     0.834
amb0011
Uncharacterized conserved protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.773
amb0337
Predicted hydrolase or acyltransferase; Alpha/beta hydrolase superfamily.
  
    0.479
amb4529
Hypothetical 132 kDa HIT-like protein in hisE 3'region.
  
    0.469
amb0133
CMP-2-keto-3-deoxyoctulosonic acid synthetase.
  
  
 0.447
kdsB
CMP-2-keto-3-deoxyoctulosonic acid synthetase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
  
 0.447
amb1419
Diadenosine tetraphosphate hydrolase and other HIT family hydrolase.
  
    0.412
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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