Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0011Uncharacterized conserved protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (157 aa)    
Predicted Functional Partners:
amb0008
Uncharacterized protein; Similar to the N-terminal domain of Lon protease.
       0.778
amb0009
Uncharacterized conserved protein; Belongs to the UPF0434 family.
       0.773
amb0010
Uncharacterized protein conserved in bacteria.
       0.773
amb0007
Thioredoxin domain-containing protein.
       0.746
amb0500
Flagellar motor switch/type III secretory pathway protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
    
   0.452
amb0505
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.452
fliE
Flagellar hook-basal body protein.
    
   0.452
amb4153
Chemotaxis protein CheC; Inhibitor of MCP methylation.
    
   0.452
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.416
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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