Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0014Ammonia permease. (449 aa)    
Predicted Functional Partners:
amb0013
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 
 0.997
amb0695
Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 
 0.996
amb0521
Glutamate synthase [NADPH] large chain precursor.
 
  
 0.728
amb0729
Predicted signal transduction protein; Containing a membrane domain.
      0.718
amb1535
Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
    
 0.663
amb2366
Signal transduction histidine kinase; Nitrogen specific.
  
 
 0.660
amb4099
FOG: EAL domain.
 
 
  
 0.632
amb1872
PAS/PAC domain.
  
 
 0.616
amb0593
Uncharacterized conserved protein; Belongs to the multicopper oxidase YfiH/RL5 family.
 
      0.606
amb2694
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
      0.604
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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