STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0024TPR repeat protein. (509 aa)    
Predicted Functional Partners:
amb2610
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
   
 0.762
mms24
TPR repeat; Probably forms a large homooligomer on which other magnetosome subunits assemble (Probable). Required for formation of functional magnetosomes from pre-existing vesicles, it has a dynamic location in the cell.
 
   
 0.758
amb2901
Hypothetical protein.
 
  
 0.703
amb3878
Sensor protein gacS.
  
 
 0.668
amb3810
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
     0.619
amb4481
Hypothetical protein.
     0.605
amb0025
Hypothetical PE-PGRS family protein Rv1325c/MT1367 precursor; Msp1.
  
    0.583
amb2504
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
     0.577
amb0687
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
 
     0.562
amb3791
Predicted O-linked N-acetylglucosamine transferase; SPINDLY family.
     0.522
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.