Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0026Hypothetical protein RP420. (177 aa)    
Predicted Functional Partners:
leuS
Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.800
amb0025
Hypothetical PE-PGRS family protein Rv1325c/MT1367 precursor; Msp1.
 
   
 0.796
amb0028
Predicted secreted protein; Periplasmic protein.
 
     0.781
amb0836
Hypothetical protein.
  
     0.775
amb1343
WD40-like repeat.
  
     0.762
amb3819
ATPase involved in chromosome partitioning.
  
     0.745
amb3934
Uncharacterized protein conserved in bacteria.
  
     0.745
amb3515
Hypothetical protein.
  
     0.742
amb3516
Cell division protein FtsI/penicillin-binding protein 2.
  
     0.738
amb3716
Parvulin-like peptidyl-prolyl isomerase.
  
   
 0.733
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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