Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0030Hypothetical protein. (350 aa)    
Predicted Functional Partners:
amb0029
DNA polymerase III; Delta subunit.
  
    0.780
leuS
Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.773
amb0028
Predicted secreted protein; Periplasmic protein.
       0.773
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.674
amb0026
Hypothetical protein RP420.
       0.561
amb0031
NAD-specific glutamate dehydrogenase.
       0.506
amb0033
Hypothetical protein.
       0.465
amb0034
Hypothetical protein.
       0.463
amb1139
Autotransporter adhesin.
  
 
 0.449
amb1998
Hypothetical protein.
  
 
 0.449
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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