STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0040Related Zn-dependent dehydrogenase. (719 aa)    
Predicted Functional Partners:
amb0092
Sialic acid synthase.
  
  
 0.846
amb0036
Uncharacterized protein; Conserved in bacteria.
 
     0.825
amb0145
Glycosyltransferase.
 
  
 0.814
amb0045
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.802
amb0037
Xanthan biosynthesis protein xanB; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
    0.791
amb0102
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.788
amb0058
dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.774
amb0041
Inhibitor of the KinA pathway to sporulation; Predicted exonuclease.
       0.773
amb1990
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.767
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.760
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.