STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0041Inhibitor of the KinA pathway to sporulation; Predicted exonuclease. (188 aa)    
Predicted Functional Partners:
amb0040
Related Zn-dependent dehydrogenase.
       0.773
amb0037
Xanthan biosynthesis protein xanB; Belongs to the mannose-6-phosphate isomerase type 2 family.
       0.693
amb0038
Nucleoside-diphosphate-sugar epimerase.
       0.693
amb0039
UDP-N-acetylmuramyl pentapeptide phosphotransferase.
       0.693
amb0043
Uncharacterized protein; Involved in methicillin resistance.
 
     0.615
amb0044
Predicted xylanase/chitin deacetylase.
 
     0.604
amb0045
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.595
amb0337
Predicted hydrolase or acyltransferase; Alpha/beta hydrolase superfamily.
  
     0.553
amb0042
Asparagine synthase.
       0.536
rnc
dsRNA-specific ribonuclease; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 
 0.525
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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