Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0043Uncharacterized protein; Involved in methicillin resistance. (331 aa)    
Predicted Functional Partners:
amb0045
Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
     0.982
amb0044
Predicted xylanase/chitin deacetylase.
 
   
 0.840
amb0042
Asparagine synthase.
       0.780
amb0040
Related Zn-dependent dehydrogenase.
 
     0.705
amb0041
Inhibitor of the KinA pathway to sporulation; Predicted exonuclease.
 
     0.615
amb0037
Xanthan biosynthesis protein xanB; Belongs to the mannose-6-phosphate isomerase type 2 family.
       0.571
amb0039
UDP-N-acetylmuramyl pentapeptide phosphotransferase.
     
 0.505
amb0038
Nucleoside-diphosphate-sugar epimerase.
       0.495
amb4480
Hypothetical protein.
 
     0.403
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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