STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0078Predicted pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (380 aa)    
Predicted Functional Partners:
amb0074
Acetyltransferase; Isoleucine patch superfamily.
 
  
 0.959
amb0085
Nucleoside-diphosphate-sugar pyrophosphorylase; eIF-2Bgamma/eIF-2Bepsilon; involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits.
 
 
 0.951
amb0079
UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.945
amb0054
Predicted pyridoxal phosphate-dependent enzyme apparently; Involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 
0.927
amb3808
Perosamine synthetase; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 
0.927
fcl
Hypothetical 347 kDa protein y4aF; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
 
 0.915
fcl-2
Nucleoside-diphosphate-sugar epimerase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
 
 0.915
amb0077
Nucleoside-diphosphate-sugar epimerase.
  
 0.908
amb1076
GDP-D-mannose dehydratase.
  
 
 0.906
amb1077
GDP-D-mannose dehydratase; Nucleoside-diphosphate-sugar epimerase.
  
 
 0.906
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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