STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0080Sialic acid synthase. (350 aa)    
Predicted Functional Partners:
amb0091
CMP-N-acetylneuraminic acid synthetase.
  
 0.983
amb0079
UDP-N-acetylglucosamine 2-epimerase.
  
 0.978
amb0088
CMP-N-acetylneuraminic acid synthetase.
  
 0.973
amb0085
Nucleoside-diphosphate-sugar pyrophosphorylase; eIF-2Bgamma/eIF-2Bepsilon; involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits.
 
  
 0.932
amb0077
Nucleoside-diphosphate-sugar epimerase.
 
    0.909
amb3806
Spore coat polysaccharide biosynthesis protein F; CMP-KDO synthetase homolog.
  
 0.881
amb0078
Predicted pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.862
amb0084
Nucleoside-diphosphate-sugar epimerase.
  
    0.795
amb0081
SAM-dependent methyltransferase.
     
 0.789
amb0083
Carbamoylphosphate synthase large subunit.
       0.786
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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