STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0086Fe-S oxidoreductase. (629 aa)    
Predicted Functional Partners:
amb0791
Fe-S oxidoreductase.
 
  
 
0.930
amb0118
Fe-S oxidoreductase.
  
  
 
0.929
amb0116
Fe-S oxidoreductase.
  
     0.770
amb3660
Fe-S oxidoreductase.
  
     0.668
amb0088
CMP-N-acetylneuraminic acid synthetase.
       0.620
amb0087
Hypothetical protein.
       0.613
amb0117
Hypothetical protein.
  
     0.605
amb3484
Glycosyltransferase, probably involved in cell wall biogenesis.
 
   
 0.571
amb0081
SAM-dependent methyltransferase.
  
  
 0.554
amb0079
UDP-N-acetylglucosamine 2-epimerase.
       0.538
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.