STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0095SAM-dependent methyltransferase. (295 aa)    
Predicted Functional Partners:
amb0089
Predicted Fe-S oxidoreductase.
 
   
 0.806
amb0092
Sialic acid synthase.
       0.777
amb0093
Hypothetical protein.
       0.773
amb0094
Probable poly(beta-D-mannuronate) O-acetylase; Belongs to the membrane-bound acyltransferase family.
       0.773
amb0090
Dehydrogenase with different specificities; Related to short-chain alcohol dehydrogenase.
   
 
 0.769
amb0091
CMP-N-acetylneuraminic acid synthetase.
       0.757
amb0087
Hypothetical protein.
       0.593
amb0088
CMP-N-acetylneuraminic acid synthetase.
       0.593
amb1082
Glycosyltransferase; Involved in cell wall biogenesis.
 
    0.515
amb0228
Glycosyltransferase; Involved in cell wall biogenesis.
 
    0.493
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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