Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb0104Lipid A core - O-antigen ligase and related enzyme. (431 aa)    
Predicted Functional Partners:
amb0105
Asparagine synthase.
  
    0.813
amb0102
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.808
amb0103
Phosphoheptose isomerase.
       0.783
amb0037
Xanthan biosynthesis protein xanB; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.703
amb0836
Hypothetical protein.
  
     0.682
amb0338
Glycosyltransferase.
 
  
 0.674
amb1121
Magnetic particle membrane specific GTPase P16.
  
     0.667
amb2682
Hypothetical protein.
 
     0.657
amb1450
Succinoglycan biosynthesis transport protein exoP.
  
  
 0.632
amb1851
Hypothetical protein.
  
  
 0.602
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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