STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0111Predicted pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (395 aa)    
Predicted Functional Partners:
amb0110
Glycosyltransferase; Involved in cell wall biogenesis.
 
  
 0.864
amb0074
Acetyltransferase; Isoleucine patch superfamily.
 
  
 0.834
amb0126
Predicted dehydrogenase and related protein.
  
 0.814
amb0109
Hypothetical protein.
       0.773
amb0112
Acetyltransferase; Isoleucine patch superfamily.
  
  
 0.691
amb0106
Acetyltransferase.
  
 0.676
amb0138
Predicted dehydrogenase and related protein.
  
 0.661
amb0099
Predicted nucleoside-diphosphate sugar epimerase.
  
 0.658
amb3933
Hypothetical phosphosugar isomerase AQ_1546; Belongs to the SIS family. GutQ/KpsF subfamily.
  
 
 0.644
amb0053
Acetyltransferase.
  
 0.596
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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