STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0112Acetyltransferase; Isoleucine patch superfamily. (192 aa)    
Predicted Functional Partners:
amb0111
Predicted pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.687
amb0106
Acetyltransferase.
 
     0.576
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.567
amb0110
Glycosyltransferase; Involved in cell wall biogenesis.
  
  
 0.565
amb0878
Acetyltransferase; Isoleucine patch superfamily.
 
   
 0.546
amb0109
Hypothetical protein.
       0.536
amb1450
Succinoglycan biosynthesis transport protein exoP.
  
  
 0.534
amb1446
Sugar transferase involved in lipopolysaccharide synthesis.
  
  
 0.530
amb0053
Acetyltransferase.
 
     0.501
amb0037
Xanthan biosynthesis protein xanB; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.420
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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