Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0117Hypothetical protein. (235 aa)    
Predicted Functional Partners:
amb0116
Fe-S oxidoreductase.
     0.983
amb0118
Fe-S oxidoreductase.
 
    
0.828
amb0119
Asparagine synthase.
       0.655
amb0120
Hypothetical protein.
       0.655
amb0791
Fe-S oxidoreductase.
  
     0.647
amb3259
Fe-S oxidoreductase.
  
     0.614
amb0086
Fe-S oxidoreductase.
  
     0.605
amb0121
Nucleoside-diphosphate-sugar pyrophosphorylase; eIF-2Bgamma/eIF-2Bepsilon; involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits.
       0.491
amb0122
Nucleoside-diphosphate-sugar epimerase.
       0.479
amb3483
Fe-S oxidoreductase.
  
     0.467
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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