STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0123Nucleoside-diphosphate-sugar epimerase. (342 aa)    
Predicted Functional Partners:
amb0121
Nucleoside-diphosphate-sugar pyrophosphorylase; eIF-2Bgamma/eIF-2Bepsilon; involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits.
 
 
 0.948
amb0140
SAM-dependent methyltransferase.
   
 0.943
amb0051
SAM-dependent methyltransferase.
 
     0.833
amb0122
Nucleoside-diphosphate-sugar epimerase.
 
    
0.787
amb0081
SAM-dependent methyltransferase.
 
   
 0.738
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
 
 0.661
amb0125
Glycosyltransferase; Involved in cell wall biogenesis.
 
  
 0.660
amb0124
dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme.
 
  
 0.651
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.612
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.594
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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