Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0126Predicted dehydrogenase and related protein. (337 aa)    
Predicted Functional Partners:
amb0106
Acetyltransferase.
  
 0.977
amb0127
Erythromycin biosynthesis sensory transduction protein eryC1; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.925
amb0052
Predicted pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.827
amb0111
Predicted pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.728
amb0075
Predicted pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.661
amb0124
dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme.
     
 0.572
amb0125
Glycosyltransferase; Involved in cell wall biogenesis.
     
 0.561
amb0053
Acetyltransferase.
 
  
 0.480
amb0092
Sialic acid synthase.
  
  
 0.467
amb2485
Uncharacterized protein conserved in bacteria.
      0.464
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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