STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb0136Phosphoglycerate dehydrogenase and related dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (318 aa)    
Predicted Functional Partners:
amb3194
Phosphoserine aminotransferase.
 
 0.982
amb0130
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase.
 
 
 0.865
amb0134
Dehydrogenase with different specificities; Related to short-chain alcohol dehydrogenase.
 
 
 
 0.853
amb0135
3-dehydroquinate synthetase.
  
  
 0.818
amb0132
Predicted dehydrogenase and related protein.
 
  
 0.810
amb0133
CMP-2-keto-3-deoxyoctulosonic acid synthetase.
       0.783
amb0131
Predicted dehydrogenase and related protein.
 
  
 0.780
amb0129
Hypothetical protein.
       0.741
cysC
NodQ bifunctional enzyme; Catalyzes the synthesis of activated sulfate.
   
  
 0.651
amb0429
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
  
 0.642
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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