Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0138Predicted dehydrogenase and related protein. (314 aa)    
Predicted Functional Partners:
amb0139
Nucleoside-diphosphate-sugar epimerase.
  
  
 0.780
amb0140
SAM-dependent methyltransferase.
       0.778
amb0141
Hypothetical protein.
  
    0.773
amb0142
Glycosyltransferase; Involved in cell wall biogenesis.
     
 0.764
amb0131
Predicted dehydrogenase and related protein.
  
     0.725
amb0106
Acetyltransferase.
  
 0.699
amb0132
Predicted dehydrogenase and related protein.
  
     0.614
amb0127
Erythromycin biosynthesis sensory transduction protein eryC1; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.538
amb0111
Predicted pyridoxal phosphate-dependent enzyme; Apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.507
amb0143
Hypothetical protein.
       0.472
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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