STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0139Nucleoside-diphosphate-sugar epimerase. (353 aa)    
Predicted Functional Partners:
amb0576
Predicted UDP-glucose 6-dehydrogenase.
 0.995
amb2159
Nucleoside-diphosphate-sugar epimerase.
  
  
 
0.913
amb0142
Glycosyltransferase; Involved in cell wall biogenesis.
 
  
 0.883
amb0140
SAM-dependent methyltransferase.
   
 0.873
amb0138
Predicted dehydrogenase and related protein.
  
  
 0.780
amb0141
Hypothetical protein.
  
    0.777
amb0084
Nucleoside-diphosphate-sugar epimerase.
  
     0.717
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
 
 0.585
amb0122
Nucleoside-diphosphate-sugar epimerase.
  
     0.580
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.576
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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