STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0140SAM-dependent methyltransferase. (414 aa)    
Predicted Functional Partners:
amb0123
Nucleoside-diphosphate-sugar epimerase.
   
 0.943
amb0139
Nucleoside-diphosphate-sugar epimerase.
   
 0.873
amb0121
Nucleoside-diphosphate-sugar pyrophosphorylase; eIF-2Bgamma/eIF-2Bepsilon; involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits.
 
  
 0.792
amb0138
Predicted dehydrogenase and related protein.
       0.779
amb0141
Hypothetical protein.
       0.778
amb0063
Nucleoside-diphosphate-sugar epimerase.
   
 0.776
amb0081
SAM-dependent methyltransferase.
  
     0.774
amb0142
Glycosyltransferase; Involved in cell wall biogenesis.
     
 0.766
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
  
 0.598
amb0143
Hypothetical protein.
       0.472
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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