STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0151Predicted xylanase/chitin deacetylase. (243 aa)    
Predicted Functional Partners:
amb0148
Hypothetical protein.
 
  
 0.820
amb0150
Glycosyltransferase.
 
  
 0.793
amb0149
Glycosyltransferase; Involved in cell wall biogenesis.
  
  
 0.772
amb3943
Predicted xylanase/chitin deacetylase.
  
     0.764
amb0152
Uncharacterized conserved protein.
       0.586
amb3484
Glycosyltransferase, probably involved in cell wall biogenesis.
 
  
 0.570
amb3053
Cellulose synthase catalytic subunit.
 
  
 0.512
amb1365
Glycosyltransferase; Involved in cell wall biogenesis.
 
  
 0.507
amb1418
Predicted membrane protein.
  
     0.448
moaA
Molybdenum cofactor biosynthesis enzyme; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.443
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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