STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0174Enoyl-CoA hydratase/carnithine racemase. (550 aa)    
Predicted Functional Partners:
amb0175
Uncharacterized conserved protein.
 
 
 0.996
amb0176
Ferredoxin-NADP reductase; Root-type isozyme, chloroplast precursor.
 
 
 0.993
amb0173
NAD-dependent aldehyde dehydrogenase.
 
 0.978
amb0177
Predicted thioesterase.
 
    0.912
amb0172
Predicted hydrolase or acyltransferase; Alpha/beta hydrolase superfamily.
 
 0.891
amb0171
Hypothetical protein.
 
     0.874
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
   
 0.861
amb2869
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
 
 
 0.802
amb2025
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
 
 0.796
amb1551
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
 
 
 0.713
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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